PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00658_BGI-A2_v1.0
Common NameF383_08818
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 344aa    MW: 38098.5 Da    PI: 6.5283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00658_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-0960107354
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Cotton_A_00658_BGI-A2_v1.0  60 LQKADREKSRRDRLNEHFLELGNALDPD----RPKNDKATILTDTIQLLKDL 107
                                 56778********************997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1657107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1257124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1258127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-858111No hitNo description
PfamPF000102.5E-760107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-763113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDQLRKDAAF LQSIPSSNPS IIEFRQPPVD PLVPSTTRTQ SKSGQRDGEE PKDCITARKL  60
QKADREKSRR DRLNEHFLEL GNALDPDRPK NDKATILTDT IQLLKDLTSQ VTKLKGEHAM  120
LTEESREVIV EKNDLKDEKA SLKSEIDDLN IQYQQRVRTM FPWASVDYPV VMAPPSYPFP  180
VPMAMPPPGA IPMHPSMQPF PFFGNQNPGV IHNPCSTFVP YMTPNTMVEQ QPTQHVTPPA  240
QPSSRSHASG KEDSKNKSSG ESKIEKTVDS NDVATDLELK TPGSTADQDL SSGQRKLKKS  300
LRKENSNTEG SYSSRCSSSY SAQDSSSNSV VGGKKADDLD GRND
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480446.10.0PREDICTED: transcription factor bHLH121
RefseqXP_012480447.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT232e-91BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0B0PZM30.0A0A0B0PZM3_G
STRINGVIT_03s0038g01790.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-82bHLH family protein